JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIAS2_chr18_46798218_46922507	0/0	t0159	9415	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0160	9412	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0161	9415	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0162	9388	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0163	9401	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0164	9394	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0165	9395	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0166	9365	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0167	9364	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0168	9373	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0169	9414	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0170	9372	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0171	9370	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0172	9376	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0173	9375	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0174	9401	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0175	9376	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0176	9383	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0177	9385	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0178	9404	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0179	9403	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0180	9403	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0181	9405	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0182	9369	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0183	9392	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0184	9399	1	0	0	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0185	9402	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0186	9409	1	0	0	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0187	9370	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0188	9372	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0189	9382	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0190	9375	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0191	9393	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0192	9364	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0193	9363	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0194	9371	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0195	9392	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0196	9408	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0197	9406	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0198	9413	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0199	9356	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0200	9369	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0201	9371	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0202	9406	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0203	9408	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0204	9372	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0205	9370	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0206	9389	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0207	9384	1	0	0	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0208	9397	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507