JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIAS2_chr18_46798218_46922507	0/0	t0209	9397	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0210	9398	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0211	9407	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0212	9411	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0213	9375	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0214	9369	1	0	0	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0215	9368	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0216	9408	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0217	9408	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0218	9403	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0219	9406	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0220	9414	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0221	9376	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0222	9401	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0223	9403	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0224	9400	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0225	9400	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0226	9403	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0227	9407	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0228	9384	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0229	9415	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0230	9392	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0231	9391	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0232	9400	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0233	9380	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0234	9379	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0235	9372	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0236	9368	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0237	9363	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0238	9371	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0239	9370	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0240	9370	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0241	9369	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0242	9368	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0243	9372	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0244	9371	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0245	9368	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0246	9387	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0247	9377	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0248	9378	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0249	9377	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0250	9381	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0251	9381	1	0	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0252	9399	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0253	9382	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0254	9378	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0255	9377	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0256	9388	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS3_chr1_145843522_145864081	1/1	t0001	1016	229	48	44	88	17	30	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0002	1015	102	18	15	60	1	8	copy fasta	PIAS3	chr1	145843522	145864081