JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIAS3_chr1_145843522_145864081	0/0	t0003	1016	18	17	1	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0004	1016	6	0	5	0	0	1	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0005	1016	3	3	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0006	1016	2	2	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0007	1016	2	2	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0008	1015	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0009	1015	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0010	1005	1	0	1	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0011	1016	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0012	1015	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	t0013	1016	1	0	0	0	0	1	copy fasta	PIAS3	chr1	145843522	145864081
PIAS4_chr19_4002736_4044386	0/1	t0001	1537	209	27	58	83	13	27	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0002	1535	27	2	10	3	4	8	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0003	1535	26	24	2	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0004	1535	24	24	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	1/0	t0005	1537	18	0	1	7	0	9	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0006	1535	5	3	0	2	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0007	1537	3	0	2	0	0	1	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0008	1535	3	3	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0009	1537	2	0	2	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0010	1537	2	0	0	2	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0011	1535	2	2	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0012	1535	2	2	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0013	1537	1	0	0	0	1	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0014	1537	1	0	0	1	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0015	1537	1	1	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0016	1537	1	0	0	1	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0017	1537	1	0	1	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0018	1537	1	1	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0019	1537	1	1	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0020	1535	1	1	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0021	1537	1	0	0	1	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0022	1537	1	0	0	0	0	1	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	t0023	1537	1	1	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIBF1_chr13_72777133_73021461	0/1	t0001	811	143	9	34	74	7	18	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	t0002	807	114	57	20	26	4	7	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	t0003	811	78	17	9	42	3	7	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	1/0	t0004	807	5	4	0	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	t0005	811	2	2	0	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	t0006	811	1	0	1	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	t0007	807	1	0	0	1	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	t0008	811	1	0	0	1	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	t0009	811	1	1	0	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PICALM_chr11_85952175_86074084	0/1	t0001	2176	326	69	53	149	11	43	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0002	2176	5	1	1	0	1	2	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	1/0	t0003	2176	5	0	4	0	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0004	2176	4	0	0	4	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0005	2176	4	4	0	0	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0006	2176	3	0	0	3	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0007	2176	2	2	0	0	0	0	copy fasta	PICALM	chr11	85952175	86074084