JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PICALM_chr11_85952175_86074084	0/0	t0008	2176	1	1	0	0	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0009	2176	1	0	0	0	0	1	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0010	2176	1	0	0	1	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0011	2176	1	1	0	0	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0012	2176	1	0	0	1	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0013	2176	1	1	0	0	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0014	2176	1	0	0	1	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0015	2176	1	1	0	0	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	t0016	2176	1	0	0	1	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICK1_chr22_38052404_38080701	1/1	t0001	811	411	98	77	177	16	41	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	t0002	811	8	1	0	7	0	0	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	t0003	811	5	0	0	0	0	5	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	t0004	811	1	0	0	1	0	0	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	t0005	811	1	0	0	1	0	0	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	t0006	811	1	1	0	0	0	0	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	t0007	811	1	0	1	0	0	0	copy fasta	PICK1	chr22	38052404	38080701
PID1_chr2_229018973_229276287	0/1	t0001	1907	92	21	13	47	2	8	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	1/0	t0002	1904	67	8	18	26	2	12	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0003	1907	54	19	16	12	1	6	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0004	1907	7	7	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0005	1907	6	4	2	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0006	1907	4	4	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0007	1907	4	0	1	0	1	2	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0008	1907	2	0	2	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0009	1907	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0010	1926	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0011	1904	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0012	1907	1	0	1	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0013	1907	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0014	1908	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0015	1908	1	0	1	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0016	1907	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0017	1907	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0018	1908	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0019	1908	1	0	0	1	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0020	1907	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0021	1907	1	0	0	0	0	1	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0022	1907	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0023	1907	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0024	1904	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0025	1908	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0026	1907	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0027	1907	1	1	0	0	0	0	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	t0028	1904	1	0	0	0	0	1	copy fasta	PID1	chr2	229018973	229276287
PIDD1_chr11_794184_810231	1/1	t0001	252	384	78	79	168	14	43	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	t0002	252	11	10	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	t0003	252	6	5	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	t0004	252	3	3	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	t0005	252	3	2	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	t0006	237	1	0	0	0	0	1	copy fasta	PIDD1	chr11	794184	810231