JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIERCE1_chr9_135490181_135504869	1/1	t0001	265	416	96	78	174	18	48	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	t0002	265	3	3	0	0	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	t0003	265	2	0	0	2	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	t0004	265	1	1	0	0	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE2_chr15_55403495_55423798	1/1	t0001	503	391	62	76	187	18	46	copy fasta	PIERCE2	chr15	55403495	55423798
PIERCE2_chr15_55403495_55423798	0/0	t0002	503	17	17	0	0	0	0	copy fasta	PIERCE2	chr15	55403495	55423798
PIERCE2_chr15_55403495_55423798	0/0	t0003	499	7	7	0	0	0	0	copy fasta	PIERCE2	chr15	55403495	55423798
PIERCE2_chr15_55403495_55423798	0/0	t0004	503	1	0	0	1	0	0	copy fasta	PIERCE2	chr15	55403495	55423798
PIEZO1_chr16_88710338_88790220	1/0	t0001	524	208	32	50	84	12	29	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0002	524	18	11	0	6	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0003	524	14	14	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0004	524	8	2	3	0	2	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0005	524	4	4	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0006	524	3	2	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0007	524	3	2	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0008	524	3	3	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0009	524	2	2	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0010	524	2	2	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0011	524	2	0	2	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0012	524	2	2	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0013	528	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0014	524	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0015	524	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0016	524	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0017	524	1	0	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/1	t0018	524	1	0	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0019	528	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0020	524	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0021	524	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0022	524	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0023	528	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0024	524	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	t0025	524	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO2_chr18_10665247_11154569	0/0	t0001	2262	82	32	18	24	3	5	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	t0002	2262	60	37	7	13	3	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	t0003	2262	9	8	1	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	t0004	2262	2	0	2	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	t0005	2262	2	0	0	1	0	1	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	t0006	2262	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	t0007	2262	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	t0008	2262	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIF1_chr15_64810632_64830647	1/1	t0001	765	121	54	28	12	9	16	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	t0002	765	117	10	15	81	0	11	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	t0003	765	85	18	18	24	9	16	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	t0004	765	9	9	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	t0005	765	7	2	1	3	0	1	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	t0006	765	5	0	3	0	0	2	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	t0007	765	1	0	0	1	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	t0008	765	1	1	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	t0009	765	1	0	1	0	0	0	copy fasta	PIF1	chr15	64810632	64830647