JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIF1_chr15_64810632_64830647	0/0	t0010	765	1	0	0	1	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIFO_chr1_111341622_111358013	1/0	t0001	1718	154	26	37	79	5	6	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0002	1718	114	39	10	41	6	18	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0003	1721	90	5	3	71	0	11	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/1	t0004	1718	24	9	9	0	1	4	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0005	1718	17	0	0	15	1	1	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0006	1718	8	0	1	1	0	6	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0007	1717	4	3	1	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0008	1718	3	0	0	0	0	3	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0009	1721	3	1	2	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0010	1718	3	3	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0011	1718	3	3	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0012	1718	2	1	1	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0013	1718	2	2	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0014	1721	2	0	1	0	1	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0015	1718	1	0	0	1	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0016	1718	1	0	0	1	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0017	1718	1	1	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0018	1718	1	1	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0019	1718	1	1	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0020	1718	1	0	1	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0021	1718	1	1	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0022	1718	1	0	0	0	0	1	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0023	1718	1	1	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0024	1721	1	0	0	1	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	t0025	1718	1	1	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIGA_chrX_15314456_15340523	1/1	t0001	2136	143	22	30	70	6	13	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	t0002	2137	89	9	13	51	2	14	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	t0003	2137	45	31	8	3	2	1	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	t0004	2136	10	0	5	5	0	0	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	t0005	2137	7	7	0	0	0	0	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	t0006	2137	6	6	0	0	0	0	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	t0007	2133	4	3	1	0	0	0	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	t0008	2137	1	0	0	0	0	1	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	t0009	2138	1	0	0	0	0	1	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	t0010	2136	1	0	0	0	1	0	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	t0011	2133	1	0	0	1	0	0	copy fasta	PIGA	chrX	15314456	15340523
PIGBOS1_chr15_55312184_55324123	0/0	t0001	780	257	80	23	125	8	21	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGBOS1_chr15_55312184_55324123	1/1	t0002	780	132	5	43	52	9	21	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGBOS1_chr15_55312184_55324123	0/0	t0003	781	9	0	3	1	1	4	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGBOS1_chr15_55312184_55324123	0/0	t0004	780	5	0	5	0	0	0	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGBOS1_chr15_55312184_55324123	0/0	t0005	780	5	5	0	0	0	0	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGBOS1_chr15_55312184_55324123	0/0	t0006	780	3	0	2	1	0	0	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGBOS1_chr15_55312184_55324123	0/0	t0007	780	2	2	0	0	0	0	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGBOS1_chr15_55312184_55324123	0/0	t0008	780	1	0	0	1	0	0	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGBOS1_chr15_55312184_55324123	0/0	t0009	780	1	0	0	1	0	0	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGBOS1_chr15_55312184_55324123	0/0	t0010	781	1	0	0	1	0	0	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGB_chr15_55314222_55360648	1/1	t0001	246	199	27	34	103	11	22	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	t0002	246	125	28	16	64	6	11	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	t0003	246	43	29	6	2	1	5	copy fasta	PIGB	chr15	55314222	55360648