JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIGB_chr15_55314222_55360648	0/0	t0004	246	8	8	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	t0005	246	1	0	0	1	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGC_chr1_172436457_172449069	1/1	t0001	563	246	72	52	85	14	21	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	t0002	563	127	13	25	68	4	17	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	t0003	563	4	0	0	4	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	t0004	563	3	3	0	0	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	t0005	563	2	2	0	0	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	t0006	563	2	0	0	2	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	t0007	563	2	2	0	0	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	t0008	563	1	0	0	1	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	t0009	563	1	0	1	0	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGF_chr2_46575937_46622041	1/1	t0001	635	299	93	45	110	12	37	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	t0002	633	54	2	23	20	2	7	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	t0003	635	10	0	7	0	2	1	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	t0004	635	1	1	0	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	t0005	635	1	0	1	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	t0006	635	1	0	0	0	0	1	copy fasta	PIGF	chr2	46575937	46622041
PIGG_chr4_494210_545200	1/1	t0001	958	216	36	61	79	8	30	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	t0002	957	107	26	8	61	2	10	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	t0003	958	24	18	1	0	0	5	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	t0004	956	6	6	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	t0005	958	4	4	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	t0006	958	2	2	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	t0007	957	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	t0008	957	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	t0009	957	1	0	0	0	0	1	copy fasta	PIGG	chr4	494210	545200
PIGH_chr14_67584318_67605268	0/1	t0001	828	165	60	25	68	2	9	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	t0002	828	120	12	29	58	5	16	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	t0003	828	83	1	16	49	5	12	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	t0004	828	46	0	0	37	2	7	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	1/0	t0005	828	23	22	0	0	0	0	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	t0006	828	16	1	7	1	4	3	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	t0007	828	3	3	0	0	0	0	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	t0008	828	2	0	1	0	0	1	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	t0009	828	1	1	0	0	0	0	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	t0010	828	1	0	0	1	0	0	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	t0011	828	1	0	0	1	0	0	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	t0012	828	1	0	0	1	0	0	copy fasta	PIGH	chr14	67584318	67605268
PIGK_chr1_77083989_77224430	0/0	t0001	3414	96	16	12	55	4	9	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	1/1	t0002	3414	94	12	18	49	4	9	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0003	3414	43	0	1	31	3	8	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0004	3414	42	26	10	3	0	3	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0005	3414	25	4	15	1	3	2	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0006	3414	21	0	8	12	0	1	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0007	3414	16	11	3	0	0	2	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0008	3414	10	8	2	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0009	3414	4	4	0	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0010	3414	4	2	2	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0011	3414	1	1	0	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0012	3414	1	1	0	0	0	0	copy fasta	PIGK	chr1	77083989	77224430