JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIGK_chr1_77083989_77224430	0/0	t0013	3414	1	0	0	1	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0014	3414	1	1	0	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0015	3414	1	0	0	0	0	1	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0016	3414	1	0	0	1	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0017	3414	1	0	1	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0018	3414	1	0	0	0	0	1	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0019	3414	1	1	0	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0020	3414	1	1	0	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	t0021	3414	1	0	0	1	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGL_chr17_16212210_16331411	1/1	t0001	531	155	62	26	43	5	17	copy fasta	PIGL	chr17	16212210	16331411
PIGL_chr17_16212210_16331411	0/0	t0002	531	60	5	27	14	4	10	copy fasta	PIGL	chr17	16212210	16331411
PIGL_chr17_16212210_16331411	0/0	t0003	531	24	12	7	3	1	1	copy fasta	PIGL	chr17	16212210	16331411
PIGL_chr17_16212210_16331411	0/0	t0004	531	3	3	0	0	0	0	copy fasta	PIGL	chr17	16212210	16331411
PIGL_chr17_16212210_16331411	0/0	t0005	531	2	0	2	0	0	0	copy fasta	PIGL	chr17	16212210	16331411
PIGL_chr17_16212210_16331411	0/0	t0006	531	1	1	0	0	0	0	copy fasta	PIGL	chr17	16212210	16331411
PIGL_chr17_16212210_16331411	0/0	t0007	531	1	1	0	0	0	0	copy fasta	PIGL	chr17	16212210	16331411
PIGM_chr1_160019953_160036990	0/0	t0001	5769	67	2	9	43	5	8	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/1	t0002	5770	62	2	12	34	2	11	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0003	5768	60	1	12	42	0	5	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0004	5764	52	18	14	16	1	3	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0005	5771	15	0	5	5	2	3	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0006	5768	11	11	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0007	5770	8	2	1	1	0	4	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0008	5770	8	7	1	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0009	5770	8	8	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0010	5767	8	0	6	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0011	5768	6	0	3	3	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0012	5770	6	6	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0013	5769	4	0	0	4	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0014	5765	4	3	0	0	1	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0015	5770	4	4	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0016	5767	4	0	0	3	0	1	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0017	5767	3	0	0	3	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0018	5771	3	0	1	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0019	5768	3	0	0	3	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0020	5768	3	0	0	3	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0021	5763	3	1	0	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0022	5771	3	3	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0023	5770	2	0	0	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0024	5770	2	0	0	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0025	5768	2	0	0	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0026	5764	2	0	0	0	0	2	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0027	5769	2	0	0	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0028	5771	2	0	0	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0029	5769	2	0	0	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0030	5768	2	0	0	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0031	5769	2	0	0	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0032	5769	2	0	1	0	0	1	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0033	5767	2	0	0	2	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0034	5768	2	2	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990