JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIGM_chr1_160019953_160036990	0/0	t0085	5768	1	0	1	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0086	5769	1	0	0	1	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0087	5767	1	0	0	1	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0088	5768	1	1	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0089	5766	1	0	0	0	0	1	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0090	5765	1	1	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0091	5763	1	0	0	1	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0092	5768	1	1	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	t0093	5770	1	1	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGN_chr18_62036164_62192056	0/0	t0001	5144	16	1	4	7	1	3	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0002	5146	12	1	0	8	0	3	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0003	5140	12	3	3	4	1	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0004	5147	10	4	3	1	2	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0005	5142	10	0	1	5	1	3	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	1/0	t0006	5141	8	1	0	5	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0007	5145	7	2	1	4	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0008	5139	7	5	1	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0009	5145	7	0	0	5	1	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/1	t0010	5145	7	0	4	1	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0011	5141	6	5	0	0	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0012	5150	6	1	2	3	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0013	5136	6	1	2	3	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0014	5143	5	3	0	1	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0015	5147	5	0	0	1	1	3	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0016	5135	5	0	1	2	0	2	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0017	5148	5	1	1	2	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0018	5138	5	1	2	1	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0019	5151	4	1	0	3	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0020	5151	4	1	0	2	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0021	5143	4	0	0	4	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0022	5145	4	0	3	0	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0023	5154	4	0	1	3	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0024	5144	4	2	1	0	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0025	5144	3	3	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0026	5143	3	0	3	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0027	5149	3	1	0	1	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0028	5139	3	0	1	2	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0029	5149	3	0	0	0	1	2	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0030	5152	3	0	1	2	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0031	5135	3	0	0	3	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0032	5145	3	0	0	3	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0033	5141	3	0	0	3	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0034	5148	3	0	0	3	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0035	5161	2	0	0	2	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0036	5147	2	2	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0037	5143	2	2	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0038	5139	2	2	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0039	5147	2	0	0	2	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0040	5140	2	0	0	1	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0041	5147	2	0	2	0	0	0	copy fasta	PIGN	chr18	62036164	62192056