JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIGN_chr18_62036164_62192056	0/0	t0142	5139	1	0	0	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0143	5137	1	0	0	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0144	5139	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0145	5152	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0146	5148	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0147	5134	1	0	0	0	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0148	5144	1	0	0	0	1	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0149	5142	1	0	1	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0150	5158	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0151	5150	1	0	0	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0152	5140	1	0	0	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	t0153	5141	1	0	0	0	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGO_chr9_35083688_35101591	0/1	t0001	842	403	78	62	201	14	47	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	1/0	t0002	842	10	9	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	t0003	842	9	8	1	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	t0004	842	1	0	1	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	t0005	842	1	1	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	t0006	842	1	0	0	1	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	t0007	842	1	0	0	0	0	1	copy fasta	PIGO	chr9	35083688	35101591
PIGP_chr21_37060374_37078071	1/1	t0001	303	214	54	45	90	6	17	copy fasta	PIGP	chr21	37060374	37078071
PIGP_chr21_37060374_37078071	0/0	t0002	303	206	30	36	103	10	27	copy fasta	PIGP	chr21	37060374	37078071
PIGP_chr21_37060374_37078071	0/0	t0003	301	15	10	5	0	0	0	copy fasta	PIGP	chr21	37060374	37078071
PIGP_chr21_37060374_37078071	0/0	t0004	303	1	0	0	1	0	0	copy fasta	PIGP	chr21	37060374	37078071
PIGQ_chr16_564968_589109	1/1	t0001	1213	145	44	41	39	10	9	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0002	1213	144	3	22	94	2	23	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0003	1213	43	9	4	12	1	17	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0004	1213	18	17	1	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0005	1213	18	0	0	17	0	1	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0006	1213	15	10	4	0	1	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0007	1213	3	0	2	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0008	1213	3	3	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0009	1213	3	3	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0010	1213	2	2	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0011	1213	2	0	0	2	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0012	1213	1	0	1	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0013	1213	1	0	0	0	1	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0014	1213	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0015	1213	1	0	0	0	1	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0016	1213	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0017	1213	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0018	1213	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0019	1213	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0020	1213	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0021	1213	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0022	1213	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	t0023	1213	1	0	1	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGR_chr1_206923522_206951466	1/1	t0001	1981	142	6	30	80	4	20	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0002	1979	97	10	18	49	8	12	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0003	1980	46	17	12	16	0	1	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0004	1979	41	28	4	9	0	0	copy fasta	PIGR	chr1	206923522	206951466