JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIGR_chr1_206923522_206951466	0/0	t0005	1979	9	7	2	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0006	1982	8	0	2	6	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0007	1979	7	0	0	7	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0008	1980	6	2	0	3	0	1	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0009	1979	4	0	0	4	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0010	1978	4	3	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0011	1980	3	0	0	3	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0012	1980	3	3	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0013	1978	3	0	0	3	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0014	1981	3	2	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0015	1980	2	2	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0016	1978	2	2	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0017	1980	2	0	1	1	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0018	1979	2	1	0	1	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0019	1979	2	2	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0020	1979	2	1	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0021	1979	1	1	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0022	1980	1	1	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0023	1981	1	0	0	1	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0024	1980	1	0	0	1	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0025	1978	1	0	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0026	1981	1	1	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0027	1981	1	0	0	0	0	1	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0028	1979	1	1	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0029	1981	1	0	0	1	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0030	1981	1	0	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0031	1980	1	1	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0032	1981	1	0	0	1	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0033	1981	1	0	0	0	0	1	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	t0034	1980	1	1	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGS_chr17_28548387_28576524	0/1	t0001	864	114	4	31	61	3	14	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0002	870	48	21	6	20	1	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0003	868	44	17	5	13	2	7	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0004	866	36	9	11	10	2	4	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0005	872	29	9	1	14	0	5	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0006	860	13	7	2	3	0	1	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	1/0	t0007	862	9	2	2	3	0	1	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0008	866	9	8	1	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0009	863	5	0	4	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0010	868	3	0	0	3	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0011	858	3	0	0	3	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0012	861	2	0	0	2	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0013	865	2	0	0	2	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0014	874	2	0	0	2	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0015	864	2	1	1	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0016	889	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0017	862	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0018	864	1	1	0	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0019	862	1	1	0	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0020	873	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524