JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIGS_chr17_28548387_28576524	0/0	t0021	850	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0022	868	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0023	864	1	1	0	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	t0024	866	1	1	0	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGT_chr20_45411141_45431241	1/1	t0001	432	456	90	82	220	16	46	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	t0002	432	4	4	0	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	t0003	432	1	0	0	0	0	1	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	t0004	432	1	0	0	0	0	1	copy fasta	PIGT	chr20	45411141	45431241
PIGU_chr20_34555542_34682092	1/1	t0001	332	314	76	44	151	9	32	copy fasta	PIGU	chr20	34555542	34682092
PIGU_chr20_34555542_34682092	0/0	t0002	332	3	0	2	0	1	0	copy fasta	PIGU	chr20	34555542	34682092
PIGU_chr20_34555542_34682092	0/0	t0003	332	1	0	0	1	0	0	copy fasta	PIGU	chr20	34555542	34682092
PIGU_chr20_34555542_34682092	0/0	t0004	332	1	1	0	0	0	0	copy fasta	PIGU	chr20	34555542	34682092
PIGU_chr20_34555542_34682092	0/0	t0005	332	1	1	0	0	0	0	copy fasta	PIGU	chr20	34555542	34682092
PIGV_chr1_26782950_26805659	1/1	t0001	3192	221	60	38	74	13	34	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0002	3192	12	1	4	3	4	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0003	3192	8	1	5	0	1	1	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0004	3192	6	0	0	6	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0005	3192	5	0	0	4	0	1	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0006	3192	4	4	0	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0007	3194	4	1	3	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0008	3192	4	3	1	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0009	3192	3	3	0	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0010	3192	2	2	0	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0011	3230	2	0	0	2	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0012	3192	1	0	1	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0013	3192	1	0	0	1	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0014	3192	1	1	0	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0015	3192	1	1	0	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0016	3192	1	0	0	1	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0017	3192	1	0	0	0	0	1	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0018	3192	1	0	0	1	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0019	3192	1	0	0	0	0	1	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0020	3192	1	1	0	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0021	3192	1	0	0	1	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	t0022	3192	1	0	0	1	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGW_chr17_36529987_36544303	0/1	t0001	1302	303	48	51	158	13	32	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0002	1302	20	0	3	15	0	2	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0003	1302	17	10	2	3	1	1	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0004	1302	15	1	13	0	0	1	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0005	1302	8	3	0	4	0	1	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0006	1323	5	4	1	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0007	1302	4	0	3	1	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0008	1302	3	2	0	0	0	1	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0009	1302	3	2	1	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0010	1302	3	0	0	0	0	3	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0011	1302	2	2	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0012	1302	2	2	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0013	1323	2	2	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0014	1302	2	2	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0015	1302	2	2	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303