JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIGW_chr17_36529987_36544303	0/0	t0016	1302	2	1	0	0	0	1	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0017	1302	1	1	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0018	1302	1	1	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0019	1302	1	1	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0020	1302	1	0	0	1	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0021	1302	1	1	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0022	1302	1	0	0	1	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0023	1302	1	1	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0024	1302	1	0	1	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0025	1344	1	0	1	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	t0026	1302	1	0	0	1	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGX_chr3_196707377_196741007	1/0	t0001	2262	73	9	9	43	2	9	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/1	t0002	2259	40	10	14	13	2	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0003	2256	40	15	15	0	3	7	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0004	2263	32	4	3	20	2	3	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0005	2264	32	10	6	10	4	2	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0006	2277	26	0	4	16	1	5	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0007	2265	24	6	4	8	0	6	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0008	2278	20	6	1	11	0	2	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0009	2254	14	0	5	8	1	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0010	2276	11	0	1	7	0	3	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0011	2279	10	2	1	6	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0012	2260	8	0	1	7	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0013	2283	7	0	0	6	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0014	2281	6	0	0	6	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0015	2262	6	0	1	1	1	3	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0016	2250	5	5	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0017	2282	5	0	0	5	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0018	2258	5	5	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0019	2255	4	4	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0020	2264	3	0	0	2	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0021	2255	2	0	0	2	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0022	2258	2	1	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0023	2262	2	1	0	0	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0024	2255	2	1	1	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0025	2280	2	0	0	2	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0026	2252	2	0	0	2	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0027	2248	2	2	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0028	2277	2	2	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0029	2263	1	0	1	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0030	2262	1	0	1	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0031	2263	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0032	2262	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0033	2265	1	0	1	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0034	2265	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0035	2259	1	0	1	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0036	2259	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0037	2262	1	0	0	0	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0038	2256	1	0	1	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0039	2256	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007