JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIGX_chr3_196707377_196741007	0/0	t0040	2273	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0041	2262	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0042	2258	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0043	2264	1	0	0	0	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0044	2284	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0045	2294	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0046	2288	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0047	2287	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0048	2273	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0049	2265	1	0	1	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0050	2263	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0051	2260	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0052	2251	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0053	2279	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0054	2262	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0055	2256	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0056	2258	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	t0057	2264	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGY_chr4_88515998_88528776	1/0	t0001	1096	358	63	65	176	12	41	copy fasta	PIGY	chr4	88515998	88528776
PIGY_chr4_88515998_88528776	0/1	t0002	1096	50	0	14	33	1	1	copy fasta	PIGY	chr4	88515998	88528776
PIGY_chr4_88515998_88528776	0/0	t0003	1096	25	22	1	0	0	2	copy fasta	PIGY	chr4	88515998	88528776
PIGY_chr4_88515998_88528776	0/0	t0004	1096	7	6	0	1	0	0	copy fasta	PIGY	chr4	88515998	88528776
PIGY_chr4_88515998_88528776	0/0	t0005	1096	1	1	0	0	0	0	copy fasta	PIGY	chr4	88515998	88528776
PIGY_chr4_88515998_88528776	0/0	t0006	1139	1	0	0	0	0	1	copy fasta	PIGY	chr4	88515998	88528776
PIGY_chr4_88515998_88528776	0/0	t0007	1096	1	0	0	0	1	0	copy fasta	PIGY	chr4	88515998	88528776
PIGY_chr4_88515998_88528776	0/0	t0008	1096	1	0	0	0	0	1	copy fasta	PIGY	chr4	88515998	88528776
PIGY_chr4_88515998_88528776	0/0	t0009	1096	1	1	0	0	0	0	copy fasta	PIGY	chr4	88515998	88528776
PIGY_chr4_88515998_88528776	0/0	t0010	1096	1	1	0	0	0	0	copy fasta	PIGY	chr4	88515998	88528776
PIGZ_chr3_196941356_196973833	1/1	t0001	949	350	65	69	154	16	44	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0002	949	34	24	1	4	0	5	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0003	949	18	3	7	8	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0004	949	10	0	0	10	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0005	949	3	0	0	2	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0006	949	2	2	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0007	949	2	0	0	2	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0008	949	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0009	949	1	0	1	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0010	949	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0011	949	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	t0012	949	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIH1D1_chr19_49441298_49456814	1/0	t0001	325	151	29	27	72	2	20	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	t0002	325	110	60	33	12	4	1	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/1	t0003	325	95	3	13	47	6	25	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	t0004	325	7	0	0	7	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	t0005	325	1	0	1	0	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	t0006	325	1	0	0	1	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	t0007	325	1	0	0	1	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D2_chr11_112062798_112079017	1/1	t0001	143	383	98	72	167	4	40	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	t0002	143	1	0	0	1	0	0	copy fasta	PIH1D2	chr11	112062798	112079017
PIK3AP1_chr10_96588315_96725514	0/1	t0001	2383	139	27	33	62	1	15	copy fasta	PIK3AP1	chr10	96588315	96725514