Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATG4B_chr2_241632693_241678857	0/0	t0013	1618	4	0	0	4	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0014	1615	4	2	2	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0015	1618	3	1	1	0	1	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0016	1614	3	1	2	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0017	1614	2	2	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0018	1611	2	2	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0019	1615	2	2	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0020	1613	2	0	0	1	0	1	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0021	1612	2	0	0	0	0	2	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0022	1618	2	0	0	2	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0023	1618	1	0	1	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0024	1615	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0025	1618	1	0	0	1	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0026	1615	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0027	1615	1	0	0	0	0	1	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0028	1615	1	0	0	1	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0029	1618	1	0	0	1	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0030	1618	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0031	1615	1	0	0	0	0	1	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0032	1616	1	0	0	1	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0033	1616	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0034	1615	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0035	1618	1	0	0	1	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0036	1612	1	0	0	0	0	1	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0037	1612	1	0	0	1	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0038	1614	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0039	1612	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0040	1612	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0041	1615	1	0	0	0	0	1	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0042	1615	1	0	0	0	0	1	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0043	1616	1	0	0	1	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	t0044	1618	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4C_chr1_62779132_62870516	1/1	t0001	1568	167	43	36	64	5	17	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0002	1568	102	29	18	48	3	4	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0003	1568	39	3	14	15	2	5	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0004	1568	4	4	0	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0005	1568	3	2	1	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0006	1568	1	0	0	1	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0007	1568	1	0	1	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0008	1568	1	0	0	0	0	1	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0009	1568	1	0	0	0	0	1	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0010	1568	1	1	0	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0011	1568	1	1	0	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	t0012	1568	1	1	0	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4D_chr19_10538904_10558418	1/1	t0001	539	356	69	70	162	12	41	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	t0002	539	31	6	7	7	4	7	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	t0003	539	8	0	0	8	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	t0004	539	7	6	1	0	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	t0005	539	1	1	0	0	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	t0006	539	1	0	0	1	0	0	copy fasta	ATG4D	chr19	10538904	10558418