JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIK3AP1_chr10_96588315_96725514	0/0	t0002	2383	71	27	17	24	1	2	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0003	2383	14	5	4	1	0	4	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0004	2380	8	8	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0005	2383	7	7	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0006	2383	4	4	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0007	2380	3	3	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0008	2380	2	1	1	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0009	2383	2	1	1	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0010	2383	2	0	2	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	1/0	t0011	2383	1	0	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0012	2383	1	0	0	1	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0013	2383	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	t0014	2383	1	0	0	0	0	1	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3C2A_chr11_17081575_17212986	1/0	t0001	3368	94	21	26	33	0	13	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0002	3365	74	0	20	47	1	6	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/1	t0003	3370	54	38	7	5	0	3	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0004	3368	48	2	4	39	0	3	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0005	3366	15	14	1	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0006	3370	14	4	7	1	1	1	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0007	3368	10	0	10	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0008	3366	7	0	0	5	0	2	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0009	3365	5	0	0	5	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0010	3367	3	0	0	3	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0011	3368	2	0	0	2	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0012	3368	2	0	0	2	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0013	3370	2	0	0	0	0	2	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0014	3400	1	0	1	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0015	3365	1	0	0	0	0	1	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0016	3370	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0017	3370	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0018	3365	1	0	0	0	0	1	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0019	3365	1	0	1	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0020	3370	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0021	3368	1	0	1	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0022	3368	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0023	3368	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0024	3368	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	t0025	3368	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2B_chr1_204417633_204499805	1/1	t0001	2754	119	37	21	33	3	23	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0002	2755	63	7	5	39	3	9	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0003	2755	33	16	3	12	1	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0004	2755	26	8	3	14	1	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0005	2755	11	0	0	10	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0006	2755	10	0	0	10	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0007	2754	5	0	1	4	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0008	2755	5	2	0	3	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0009	2756	4	0	1	2	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0010	2754	4	3	1	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0011	2755	3	3	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0012	2754	2	2	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805