JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIK3C2B_chr1_204417633_204499805	0/0	t0013	2754	2	0	0	2	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0014	2756	2	2	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0015	2756	2	0	0	2	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0016	2754	1	0	1	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0017	2754	1	0	1	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0018	2754	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0019	2755	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0020	2754	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0021	2755	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0022	2754	1	0	1	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0023	2754	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0024	2755	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0025	2756	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	t0026	2754	1	0	0	0	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2G_chr12_18256518_18653416	0/1	t0001	527	124	35	27	36	7	18	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	t0002	526	31	22	3	3	2	1	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	t0003	523	13	6	4	2	0	1	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	t0004	527	4	1	0	0	1	2	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	1/0	t0005	527	2	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	t0006	527	1	0	0	1	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	t0007	527	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C3_chr18_41950234_42092830	0/1	t0001	6750	62	8	10	32	1	10	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0002	6749	61	10	10	36	0	5	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	1/0	t0003	6752	52	3	15	22	2	9	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0004	6751	18	5	6	5	0	2	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0005	6748	12	0	5	4	2	1	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0006	6747	11	11	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0007	6750	8	5	1	2	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0008	6747	6	6	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0009	6751	6	1	0	5	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0010	6750	6	0	5	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0011	6751	6	0	0	5	0	1	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0012	6750	5	0	0	5	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0013	6748	5	0	4	0	0	1	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0014	6749	5	5	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0015	6750	4	0	0	4	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0016	6751	4	0	0	4	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0017	6751	4	0	0	4	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0018	6750	4	0	0	4	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0019	6752	3	0	3	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0020	6749	3	3	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0021	6748	3	3	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0022	6749	3	3	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0023	6745	2	2	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0024	6752	2	0	0	2	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0025	6750	2	0	0	0	0	2	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0026	6749	2	0	1	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0027	6751	2	0	2	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0028	6751	2	2	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0029	6751	2	0	0	1	0	1	copy fasta	PIK3C3	chr18	41950234	42092830