JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIK3C3_chr18_41950234_42092830	0/0	t0030	6750	2	2	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0031	6750	2	0	0	2	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0032	6749	2	0	0	2	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0033	6745	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0034	6745	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0035	6750	1	0	0	0	1	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0036	6749	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0037	6751	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0038	6750	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0039	6749	1	0	0	0	1	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0040	6750	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0041	6752	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0042	6750	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0043	6752	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0044	6752	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0045	6751	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0046	6752	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0047	6747	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0048	6752	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0049	6751	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0050	6747	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0051	6751	1	0	0	0	1	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0052	6749	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0053	6752	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0054	6751	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0055	6751	1	0	0	0	0	1	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0056	6748	1	0	0	0	0	1	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0057	6750	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0058	6750	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0059	6748	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0060	6749	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	t0061	6750	1	0	0	1	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3CA_chr3_179143357_179245093	1/1	t0001	6053	130	35	25	51	6	11	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0002	6053	38	9	11	17	0	1	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0003	6053	31	19	9	0	2	1	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0004	6054	14	1	4	0	3	6	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0005	6053	11	3	3	2	0	3	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0006	6053	9	2	0	4	0	3	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0007	6053	9	1	4	4	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0008	6053	6	3	1	0	0	2	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0009	6053	5	0	0	4	0	1	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0010	6053	5	3	2	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0011	6053	3	0	0	0	0	3	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0012	6053	2	0	0	0	1	1	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0013	6053	2	0	1	1	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0014	6053	2	2	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0015	6053	1	1	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0016	6053	1	0	0	1	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0017	6053	1	1	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0018	6053	1	1	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093