JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIK3CA_chr3_179143357_179245093	0/0	t0019	6053	1	0	1	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0020	6054	1	0	0	0	0	1	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0021	6053	1	1	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0022	6053	1	0	0	1	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0023	6053	1	0	0	0	0	1	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0024	6053	1	0	0	1	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0025	6053	1	1	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0026	6053	1	1	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0027	6053	1	1	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0028	6053	1	1	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	t0029	6053	1	0	1	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CB_chr3_138647698_138839928	0/1	t0001	3047	75	10	17	24	6	17	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	1/0	t0002	3047	62	29	10	5	4	13	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0003	3047	24	20	4	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0004	3047	17	13	4	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0005	3047	6	1	4	0	0	1	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0006	3047	4	2	2	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0007	3047	2	2	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0008	3047	2	2	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0009	3047	1	0	0	0	0	1	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0010	3047	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0011	3047	1	0	0	0	0	1	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0012	3047	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0013	3047	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0014	3047	1	0	0	0	0	1	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0015	3047	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0016	3047	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0017	3047	1	0	0	1	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0018	3047	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0019	3047	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0020	3047	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0021	3047	1	0	1	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	t0022	3047	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CD_chr1_9646731_9734114	0/1	t0001	2278	95	14	27	37	6	10	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0002	2278	73	15	14	30	3	11	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0003	2280	66	20	10	21	2	13	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	1/0	t0004	2278	19	0	11	0	1	6	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0005	2278	15	13	2	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0006	2280	10	2	1	7	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0007	2278	5	5	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0008	2280	5	0	0	5	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0009	2281	3	0	0	3	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0010	2278	2	2	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0011	2278	2	2	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0012	2280	2	0	0	2	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0013	2278	2	0	2	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0014	2278	1	0	0	1	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0015	2278	1	0	0	0	0	1	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0016	2278	1	0	0	1	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0017	2278	1	0	0	0	1	0	copy fasta	PIK3CD	chr1	9646731	9734114