JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIK3CD_chr1_9646731_9734114	0/0	t0018	2278	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0019	2278	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0020	2278	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0021	2278	1	0	0	0	1	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0022	2278	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0023	2278	1	0	0	1	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0024	2266	1	0	0	1	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0025	2280	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0026	2280	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0027	2280	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0028	2280	1	0	1	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0029	2278	1	0	0	0	0	1	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0030	2278	1	0	0	1	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0031	2265	1	0	0	1	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	t0032	2280	1	0	0	1	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CG_chr7_106860282_106913980	0/1	t0001	3751	119	16	25	62	2	13	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0002	3776	59	3	9	44	2	1	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0003	3751	44	2	4	28	1	9	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	1/0	t0004	3751	17	12	1	0	0	3	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0005	3776	16	0	5	2	2	7	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0006	3751	14	2	5	0	1	6	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0007	3751	14	14	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0008	3756	12	1	6	1	3	1	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0009	3753	9	0	4	5	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0010	3751	8	8	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0011	3755	7	6	1	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0012	3753	6	5	1	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0013	3755	4	2	1	1	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0014	3753	4	0	0	4	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0015	3775	4	0	1	3	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0016	3751	4	4	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0017	3756	3	0	0	3	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0018	3776	3	3	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0019	3753	2	2	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0020	3753	2	2	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0021	3750	2	0	0	2	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0022	3776	2	0	2	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0023	3751	2	2	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0024	3757	2	2	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0025	3751	1	0	0	0	0	1	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0026	3752	1	0	0	1	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0027	3751	1	0	1	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0028	3751	1	1	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0029	3751	1	0	0	1	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0030	3751	1	1	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0031	3751	1	1	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0032	3750	1	1	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0033	3752	1	0	0	1	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0034	3757	1	1	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	t0035	3753	1	1	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980