JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIK3R1_chr5_68210756_68306821	0/0	t0073	4802	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0074	4800	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0075	4796	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0076	4796	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0077	4794	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0078	4800	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0079	4794	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0080	4792	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0081	4798	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0082	4796	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0083	4796	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0084	4788	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0085	4784	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0086	4780	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0087	4800	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0088	4796	1	0	0	0	1	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0089	4800	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0090	4788	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0091	4791	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0092	4800	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0093	4800	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0094	4797	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0095	4797	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0096	4791	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0097	4786	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0098	4792	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0099	4788	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0100	4798	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0101	4794	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0102	4796	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0103	4798	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0104	4796	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0105	4797	1	0	0	0	1	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0106	4787	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0107	4799	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0108	4797	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0109	4801	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0110	4790	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0111	4790	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0112	4801	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0113	4799	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0114	4799	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0115	4790	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0116	4811	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0117	4784	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0118	4783	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0119	4789	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0120	4789	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0121	4797	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0122	4779	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821