JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIK3R1_chr5_68210756_68306821	0/0	t0123	4801	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0124	4787	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0125	4779	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0126	4797	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0127	4793	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0128	4801	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0129	4799	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0130	4801	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0131	4795	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0132	4799	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0133	4795	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0134	4801	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0135	4799	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0136	4797	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0137	4798	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0138	4797	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0139	4795	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0140	4803	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0141	4799	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0142	4795	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0143	4797	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0144	4801	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0145	4795	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0146	4793	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0147	4803	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0148	4800	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0149	4800	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0150	4801	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0151	4797	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0152	4800	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0153	4795	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0154	4797	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0155	4795	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0156	4799	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0157	4795	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0158	4801	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0159	4789	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0160	4793	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0161	4795	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0162	4803	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0163	4777	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0164	4775	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0165	4771	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0166	4789	1	0	0	0	1	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0167	4787	1	0	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0168	4785	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0169	4742	1	0	0	0	1	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0170	4800	1	0	0	0	1	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0171	4789	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0172	4789	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821