JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIK3R1_chr5_68210756_68306821	0/0	t0173	4799	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0174	4790	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0175	4802	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0176	4792	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0177	4788	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0178	4800	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0179	4798	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0180	4788	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	t0181	4785	1	1	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R2_chr19_18148163_18175532	1/1	t0001	1794	270	52	56	109	12	39	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0002	1792	21	20	1	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0003	1794	11	10	1	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0004	1794	7	0	2	5	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0005	1794	6	6	0	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0006	1792	3	3	0	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0007	1794	1	1	0	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0008	1830	1	0	1	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0009	1794	1	0	1	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0010	1794	1	0	1	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0011	1792	1	1	0	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0012	1794	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0013	1794	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0014	1794	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0015	1794	1	1	0	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0016	1794	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0017	1794	1	1	0	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0018	1794	1	0	1	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0019	1794	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0020	1794	1	0	0	0	0	1	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0021	1794	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	t0022	1794	1	1	0	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R3_chr1_46035140_46137629	0/0	t0001	4211	118	32	19	47	5	15	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	1/0	t0002	4211	88	12	19	46	2	8	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/1	t0003	4212	27	4	13	0	3	6	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0004	4211	16	0	8	8	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0005	4211	12	1	0	11	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0006	4211	10	9	1	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0007	4211	9	9	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0008	4211	8	1	4	0	0	3	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0009	4211	3	0	0	3	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0010	4211	3	3	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0011	4212	2	2	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0012	4211	2	2	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0013	4212	2	2	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0014	4211	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0015	4211	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0016	4212	1	0	0	0	0	1	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0017	4212	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0018	4211	1	0	0	1	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0019	4211	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629