Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATG4D_chr19_10538904_10558418	0/0	t0007	539	1	1	0	0	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	t0008	539	1	1	0	0	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG5_chr6_106179476_106330760	1/1	t0001	2358	328	61	53	172	8	32	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0002	2358	6	4	0	0	2	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0003	2358	5	0	0	5	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0004	2358	5	0	2	0	2	1	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0005	2354	4	4	0	0	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0006	2358	2	0	0	0	2	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0007	2358	2	0	0	0	0	2	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0008	2358	2	2	0	0	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0009	2358	1	0	0	0	0	1	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0010	2358	1	0	1	0	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0011	2358	1	0	0	1	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	t0012	2358	1	1	0	0	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG7_chr3_11267397_11562665	0/1	t0001	3222	103	17	33	34	5	13	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0002	3222	61	10	9	36	0	6	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0003	3223	16	4	1	11	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0004	3222	14	9	1	4	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0005	3218	9	9	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0006	3223	8	5	3	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0007	3218	7	7	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0008	3218	6	6	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0009	3222	6	2	1	0	0	3	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0010	3218	5	3	1	0	1	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0011	3222	5	0	0	5	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0012	3223	3	0	0	2	0	1	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0013	3219	3	2	1	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0014	3218	3	3	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0015	3218	2	2	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0016	3222	2	0	2	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0017	3219	2	1	1	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0018	3222	2	0	0	2	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0019	3222	2	2	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0020	3223	2	0	0	0	0	2	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0021	3222	1	0	0	0	0	1	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0022	3218	1	0	1	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0023	3222	1	0	1	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0024	3219	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0025	3219	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0026	3222	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	1/0	t0027	3222	1	0	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0028	3223	1	0	0	1	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0029	3222	1	0	0	0	0	1	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0030	3222	1	0	0	0	0	1	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0031	3218	1	0	1	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0032	3218	1	0	1	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0033	3223	1	0	0	0	0	1	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0034	3222	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0035	3219	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0036	3218	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665