JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIK3R3_chr1_46035140_46137629	0/0	t0020	4211	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0021	4211	1	0	0	1	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0022	4211	1	0	0	1	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0023	4211	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0024	4211	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0025	4211	1	0	0	1	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0026	4211	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0027	4211	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0028	4211	1	0	0	0	0	1	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0029	4211	1	0	0	1	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0030	4211	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	t0031	4211	1	1	0	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R4_chr3_130673934_130751829	0/0	t0001	940	153	52	25	63	2	11	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	1/1	t0002	940	127	23	21	65	4	12	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	t0003	941	17	0	4	12	0	1	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	t0004	940	5	5	0	0	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	t0005	940	1	0	0	0	0	1	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	t0006	940	1	0	0	0	0	1	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R5_chr17_8873916_8970707	1/1	t0001	1849	268	72	45	101	12	36	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0002	1849	5	5	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0003	1849	4	4	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0004	1849	4	4	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0005	1849	4	0	4	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0006	1849	3	0	0	3	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0007	1849	2	0	0	0	0	2	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0008	1849	2	2	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0009	1849	1	0	0	0	0	1	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0010	1849	1	0	0	1	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0011	1849	1	1	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0012	1849	1	0	1	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0013	1849	1	0	0	1	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	t0014	1849	1	0	0	0	0	1	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R6_chr17_8797722_8872674	1/1	t0001	789	234	79	44	79	6	24	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	t0002	789	111	3	22	58	8	20	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	t0003	789	2	2	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	t0004	789	2	0	2	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	t0005	789	2	2	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	t0006	789	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	t0007	789	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	t0008	789	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIKFYVE_chr2_208261255_208363746	0/1	t0001	3615	182	39	35	74	9	24	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0002	3609	28	8	13	4	2	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0003	3611	16	7	1	6	0	2	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0004	3614	8	6	1	0	0	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0005	3612	7	5	1	1	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	1/0	t0006	3612	6	5	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0007	3615	4	4	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0008	3614	4	4	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0009	3615	4	0	0	0	0	4	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0010	3612	3	0	0	0	1	2	copy fasta	PIKFYVE	chr2	208261255	208363746