JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIKFYVE_chr2_208261255_208363746	0/0	t0011	3612	3	0	0	3	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0012	3614	3	3	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0013	3615	2	2	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0014	3611	2	1	1	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0015	3614	2	2	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0016	3615	2	0	0	0	0	2	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0017	3612	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0018	3611	1	0	0	1	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0019	3611	1	0	0	1	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0020	3615	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0021	3615	1	0	0	0	0	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0022	3615	1	0	0	1	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0023	3615	1	0	1	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0024	3615	1	0	1	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0025	3614	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0026	3615	1	0	0	1	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0027	3615	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	t0028	3615	1	0	0	0	0	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PILRA_chr7_100368487_100405096	1/1	t0001	360	362	90	58	152	16	44	copy fasta	PILRA	chr7	100368487	100405096
PILRA_chr7_100368487_100405096	0/0	t0002	360	2	2	0	0	0	0	copy fasta	PILRA	chr7	100368487	100405096
PILRB_chr7_100353117_100372831	1/1	t0001	641	338	76	55	153	12	40	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	t0002	640	20	1	3	6	4	6	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	t0003	641	6	1	4	1	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	t0004	640	6	6	0	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	t0005	640	3	3	0	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	t0006	640	2	0	2	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	t0007	641	2	2	0	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	t0008	641	2	2	0	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	t0009	641	1	1	0	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	t0010	641	1	0	0	1	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	t0011	641	1	0	0	1	0	0	copy fasta	PILRB	chr7	100353117	100372831
PIM1_chr6_37165152_37180428	0/1	t0001	1759	236	54	39	111	6	25	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0002	1759	75	25	16	16	6	12	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0003	1759	38	0	3	33	1	1	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0004	1759	26	3	1	18	0	4	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0005	1759	5	5	0	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0006	1759	5	0	4	0	1	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0007	1759	4	0	2	0	0	2	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0008	1759	3	1	1	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0009	1759	3	3	0	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0010	1759	2	0	0	2	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0011	1750	1	0	0	0	0	1	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0012	1759	1	0	1	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0013	1759	1	0	0	0	0	1	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0014	1759	1	0	0	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0015	1759	1	1	0	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0016	1759	1	0	1	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0017	1759	1	0	1	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0018	1759	1	0	0	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0019	1759	1	1	0	0	0	0	copy fasta	PIM1	chr6	37165152	37180428