JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIM1_chr6_37165152_37180428	0/0	t0020	1759	1	1	0	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0021	1759	1	0	0	0	0	1	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0022	1759	1	0	0	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0023	1759	1	0	0	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0024	1759	1	0	0	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0025	1762	1	0	0	0	0	1	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	1/0	t0026	1762	1	0	0	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	t0027	1759	1	0	1	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM2_chrX_48908182_48924024	0/0	t0001	1141	190	28	39	99	6	18	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	1/1	t0002	1140	50	35	9	0	0	4	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0003	1142	12	3	2	6	0	1	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0004	1140	4	4	0	0	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0005	1142	3	0	0	3	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0006	1140	2	2	0	0	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0007	1136	2	2	0	0	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0008	1134	2	0	0	2	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0009	1141	2	0	0	2	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0010	1140	1	0	0	1	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0011	1131	1	0	0	1	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0012	1139	1	0	0	0	1	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0013	1130	1	0	0	1	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0014	1140	1	1	0	0	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0015	1140	1	0	0	1	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0016	1140	1	0	0	1	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0017	1141	1	0	0	1	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0018	1132	1	0	0	1	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0019	1142	1	0	0	0	0	1	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	t0020	1140	1	0	0	1	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM3_chr22_49955772_49969072	0/0	t0001	1122	278	63	52	122	11	30	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	1/0	t0002	1122	109	22	18	49	5	14	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0003	1122	7	5	2	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0004	1122	4	0	1	2	1	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0005	1122	4	3	0	0	0	1	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0006	1122	3	0	3	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0007	1122	2	0	0	2	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0008	1122	2	2	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0009	1122	1	0	0	1	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0010	1122	1	0	0	1	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0011	1122	1	0	0	1	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0012	1122	1	1	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0013	1122	1	0	0	0	0	1	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0014	1122	1	0	1	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0015	1122	1	0	0	1	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0016	1122	1	0	0	1	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0017	1159	1	0	0	0	1	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0018	1138	1	0	0	1	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0019	1122	1	1	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0020	1122	1	1	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/1	t0021	1122	1	0	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0022	1122	1	0	0	0	0	1	copy fasta	PIM3	chr22	49955772	49969072