JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIM3_chr22_49955772_49969072	0/0	t0023	1122	1	0	0	1	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0024	1122	1	0	1	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	t0025	1122	1	0	0	0	0	1	copy fasta	PIM3	chr22	49955772	49969072
PIMREG_chr17_6439455_6456469	0/1	t0001	1192	153	17	36	69	13	17	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	1/0	t0002	1192	66	23	11	20	3	8	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0003	1192	40	4	14	16	0	6	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0004	1192	16	14	2	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0005	1192	11	5	0	6	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0006	1192	6	5	1	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0007	1192	4	3	0	0	0	1	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0008	1192	3	3	0	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0009	1192	3	0	0	3	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0010	1192	2	0	0	0	2	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0011	1192	1	1	0	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0012	1192	1	1	0	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0013	1168	1	0	0	0	0	1	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0014	1192	1	1	0	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0015	1192	1	1	0	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0016	1192	1	1	0	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0017	1192	1	0	0	0	0	1	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	t0018	1192	1	1	0	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIN1_chr19_9830318_9854689	1/1	t0001	518	418	98	70	188	16	44	copy fasta	PIN1	chr19	9830318	9854689
PIN1_chr19_9830318_9854689	0/0	t0002	518	2	0	0	0	0	2	copy fasta	PIN1	chr19	9830318	9854689
PIN1_chr19_9830318_9854689	0/0	t0003	518	1	0	0	0	0	1	copy fasta	PIN1	chr19	9830318	9854689
PIN1_chr19_9830318_9854689	0/0	t0004	518	1	0	0	0	0	1	copy fasta	PIN1	chr19	9830318	9854689
PIN4_chrX_72176757_72203340	0/0	t0001	844	184	43	40	75	5	21	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	1/1	t0002	844	115	31	7	68	0	7	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	t0003	844	2	0	2	0	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	t0004	842	1	0	0	1	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	t0005	833	1	0	1	0	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	t0006	844	1	0	1	0	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	t0007	840	1	1	0	0	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	t0008	843	1	0	0	1	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	t0009	844	1	1	0	0	0	0	copy fasta	PIN4	chrX	72176757	72203340
PINK1_chr1_20628458_20656511	0/1	t0001	915	162	37	38	62	6	18	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	1/0	t0002	912	79	18	13	39	3	5	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0003	916	74	0	4	55	3	12	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0004	912	50	16	9	15	5	5	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0005	912	43	0	8	30	1	4	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0006	916	16	2	1	10	0	3	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0007	912	12	10	2	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0008	912	4	4	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0009	916	4	4	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0010	916	2	0	0	2	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0011	912	2	0	2	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0012	916	2	2	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0013	916	1	0	0	1	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0014	912	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0015	916	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0016	912	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511