JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PINK1_chr1_20628458_20656511	0/0	t0017	915	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0018	916	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0019	912	1	0	1	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	t0020	912	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINLYP_chr19_43570801_43587098	0/0	t0001	1298	315	45	51	177	13	29	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	1/0	t0002	1294	64	16	9	28	3	7	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/1	t0003	1296	28	10	11	0	2	4	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	t0004	1299	10	3	4	1	0	2	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	t0005	1295	9	8	1	0	0	0	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	t0006	1300	7	2	2	3	0	0	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	t0007	1298	6	4	2	0	0	0	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	t0008	1294	6	6	0	0	0	0	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	t0009	1300	1	1	0	0	0	0	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	t0010	1296	1	1	0	0	0	0	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	t0011	1298	1	0	0	0	0	1	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	t0012	1298	1	0	0	1	0	0	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	t0013	1294	1	0	0	0	0	1	copy fasta	PINLYP	chr19	43570801	43587098
PINX1_chr8_10759961_10844875	0/0	t0001	560	253	53	47	115	10	28	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	t0002	562	50	28	2	17	1	2	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	t0003	560	29	4	12	0	5	8	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	t0004	560	7	7	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	t0005	562	5	5	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	t0006	560	3	0	1	0	0	2	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	t0007	560	2	0	0	2	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	t0008	562	1	0	1	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	t0009	560	1	0	1	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	t0010	560	1	1	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PIP4K2A_chr10_22529854_22719578	0/0	t0001	2597	58	23	12	8	3	12	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0002	2598	24	10	8	4	0	2	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/1	t0003	2618	22	1	5	10	2	3	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	1/0	t0004	2600	7	0	4	0	0	2	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0005	2593	6	6	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0006	2595	6	5	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0007	2618	5	2	1	0	2	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0008	2596	4	4	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0009	2619	4	1	0	2	0	1	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0010	2598	4	4	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0011	2614	3	2	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0012	2596	3	0	1	1	0	1	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0013	2594	3	0	3	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0014	2598	3	3	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0015	2594	2	2	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0016	2613	2	2	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0017	2596	2	0	1	0	0	1	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0018	2597	2	2	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0019	2599	2	1	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0020	2599	2	2	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0021	2599	2	2	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0022	2602	2	2	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0023	2620	2	0	1	0	0	1	copy fasta	PIP4K2A	chr10	22529854	22719578