JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIP4K2A_chr10_22529854_22719578	0/0	t0024	2619	2	0	2	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0025	2599	2	2	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0026	2600	2	1	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0027	2597	1	0	0	1	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0028	2598	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0029	2597	1	0	0	1	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0030	2600	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0031	2592	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0032	2598	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0033	2590	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0034	2590	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0035	2590	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0036	2591	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0037	2597	1	0	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0038	2597	1	0	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0039	2598	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0040	2599	1	0	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0041	2601	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0042	2603	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0043	2619	1	0	0	0	1	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0044	2620	1	0	0	0	0	1	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0045	2618	1	0	0	0	0	1	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0046	2618	1	0	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0047	2618	1	0	0	1	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0048	2618	1	0	0	1	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0049	2618	1	0	0	0	0	1	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0050	2620	1	0	0	1	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0051	2617	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0052	2618	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0053	2600	1	0	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0054	2600	1	0	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0055	2600	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	t0056	2598	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2B_chr17_38760691_38804556	0/0	t0001	4133	105	26	28	34	4	13	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0002	4132	101	7	14	63	2	15	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/1	t0003	4133	65	0	9	52	1	2	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0004	4133	16	16	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0005	4132	15	3	1	6	2	3	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0006	4133	13	5	4	0	1	3	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0007	4132	9	0	3	6	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0008	4132	6	6	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0009	4133	5	2	0	3	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0010	4133	5	5	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0011	4133	4	3	1	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0012	4132	3	3	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0013	4132	3	3	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0014	4133	3	3	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0015	4133	3	3	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0016	4132	3	3	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0017	4133	2	0	0	2	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556