JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIP4K2B_chr17_38760691_38804556	0/0	t0018	4133	1	0	0	0	0	1	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0019	4132	1	0	0	0	0	1	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0020	4133	1	1	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0021	4132	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0022	4132	1	1	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0023	4132	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0024	4132	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0025	4133	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0026	4133	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0027	4133	1	1	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0028	4132	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0029	4133	1	1	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0030	4133	1	0	0	0	0	1	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0031	4132	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0032	4133	1	0	0	0	0	1	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0033	4133	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0034	4133	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	t0035	4133	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2C_chr12_57586192_57608418	1/1	t0001	1911	357	78	66	162	16	33	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0002	1913	14	11	1	0	0	2	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0003	1911	5	4	1	0	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0004	1911	2	0	0	2	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0005	1911	1	1	0	0	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0006	1911	1	0	0	0	0	1	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0007	1911	1	0	0	1	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0008	1911	1	0	0	1	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0009	1911	1	1	0	0	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0010	1911	1	0	0	1	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0011	1911	1	1	0	0	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	t0012	1911	1	0	0	1	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4P1_chr14_20452681_20466434	1/1	t0001	988	417	64	77	219	18	37	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0002	988	20	17	3	0	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0003	986	11	0	1	5	0	5	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0004	979	4	0	0	4	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0005	988	3	3	0	0	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0006	988	3	3	0	0	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0007	988	2	1	1	0	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0008	988	2	2	0	0	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0009	988	1	0	0	1	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0010	988	1	0	0	0	0	1	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0011	988	1	0	0	1	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0012	988	1	1	0	0	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0013	988	1	0	0	0	0	1	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	t0014	1003	1	1	0	0	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P2_chr8_90988802_91045859	1/1	t0001	1986	191	58	24	87	7	13	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0002	1985	102	13	26	46	5	12	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0003	1986	34	17	1	14	0	2	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0004	1986	3	0	3	0	0	0	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0005	1985	2	0	0	0	0	2	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0006	1985	1	0	1	0	0	0	copy fasta	PIP4P2	chr8	90988802	91045859