JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIP4P2_chr8_90988802_91045859	0/0	t0007	2007	1	1	0	0	0	0	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0008	1986	1	0	0	0	0	1	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0009	1986	1	0	0	1	0	0	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0010	1986	1	1	0	0	0	0	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0011	1997	1	0	1	0	0	0	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0012	1985	1	0	1	0	0	0	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0013	1986	1	0	0	1	0	0	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0014	1965	1	0	0	1	0	0	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	t0015	2007	1	0	1	0	0	0	copy fasta	PIP4P2	chr8	90988802	91045859
PIP5K1A_chr1_151193552_151254531	0/1	t0001	2110	158	35	34	65	7	16	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0002	2112	81	12	13	49	0	7	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0003	2112	48	13	11	13	7	4	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	1/0	t0004	2112	9	8	0	0	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0005	2110	7	7	0	0	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0006	2112	7	7	0	0	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0007	2113	4	1	1	0	0	2	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0008	2112	3	0	0	0	1	2	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0009	2110	2	0	0	2	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0010	2110	2	1	0	0	1	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0011	2110	2	0	2	0	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0012	2112	2	0	1	0	0	1	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0013	2112	1	0	0	0	0	1	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0014	2110	1	0	0	0	0	1	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0015	2112	1	1	0	0	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0016	2112	1	1	0	0	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0017	2112	1	0	0	0	0	1	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0018	2112	1	0	0	1	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0019	2110	1	1	0	0	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0020	2110	1	0	0	0	0	1	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	t0021	2112	1	1	0	0	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1B_chr9_68700240_69014176	0/0	t0001	1493	114	41	11	44	5	13	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	1/1	t0002	1493	73	25	10	28	2	6	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	t0003	1493	21	10	3	5	1	2	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	t0004	1502	3	1	2	0	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	t0005	1493	3	2	1	0	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	t0006	1493	2	0	0	0	1	1	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	t0007	1502	1	0	0	0	1	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	t0008	1493	1	0	1	0	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	t0009	1493	1	1	0	0	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	t0010	1475	1	0	0	1	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1C_chr19_3625183_3705468	0/1	t0001	3063	61	12	19	9	9	11	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	t0002	3063	45	1	13	26	2	3	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	t0003	3063	40	13	3	19	0	5	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	t0004	3063	39	0	2	33	1	3	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	t0005	3063	29	3	4	12	1	9	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	t0006	3063	22	8	11	0	3	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	t0007	3063	10	10	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	t0008	3063	6	0	0	6	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	t0009	3063	5	5	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	t0010	3063	5	5	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468