JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIPOX_chr17_29038141_29062216	0/0	t0003	997	7	7	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0004	997	5	5	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0005	998	5	3	1	0	0	1	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0006	998	4	4	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0007	996	4	3	1	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0008	997	3	3	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0009	997	3	0	0	3	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0010	997	2	2	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0011	997	2	2	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0012	997	2	2	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0013	996	2	2	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0014	997	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0015	997	1	0	0	1	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0016	997	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0017	998	1	0	0	0	0	1	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0018	997	1	0	1	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0019	997	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0020	997	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	t0021	997	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIP_chr7_143127077_143144739	1/1	t0001	138	340	98	72	108	12	48	copy fasta	PIP	chr7	143127077	143144739
PIRT_chr17_10817470_10843087	1/0	t0001	3044	143	14	29	78	7	14	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0002	3044	87	20	11	45	1	10	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0003	3044	71	15	13	34	3	6	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0004	3044	70	3	22	32	5	8	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/1	t0005	3044	20	9	4	1	1	4	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0006	3044	9	9	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0007	3044	9	9	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0008	3044	6	0	2	0	1	3	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0009	3044	5	0	3	0	0	2	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0010	3044	4	4	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0011	3044	3	2	1	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0012	3044	3	0	0	3	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0013	3044	2	0	0	2	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0014	3044	2	2	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0015	3044	2	0	2	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0016	3044	2	2	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0017	3044	2	0	0	2	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0018	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0019	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0020	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0021	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0022	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0023	3044	1	0	1	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0024	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0025	3044	1	0	0	1	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0026	3044	1	0	0	0	0	1	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0027	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0028	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0029	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	t0030	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087