Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATG7_chr3_11267397_11562665	0/0	t0037	3218	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0038	3223	1	0	0	0	0	1	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0039	3218	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0040	3218	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0041	3218	1	0	0	0	1	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0042	3222	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0043	3222	1	0	1	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0044	3224	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0045	3222	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0046	3222	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0047	3223	1	0	0	1	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0048	3222	1	0	0	1	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0049	3222	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0050	3223	1	0	0	1	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	t0051	3222	1	0	0	0	1	0	copy fasta	ATG7	chr3	11267397	11562665
ATG9A_chr2_219214380_219234636	0/1	t0001	1251	192	27	37	92	12	23	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0002	1251	40	16	10	8	0	6	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0003	1251	24	0	0	23	0	1	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0004	1251	19	0	13	0	4	2	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0005	1251	17	16	1	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0006	1251	12	0	12	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0007	1251	11	11	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	1/0	t0008	1251	9	7	1	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0009	1251	6	6	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0010	1251	4	0	1	3	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0011	1251	2	0	0	2	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0012	1251	2	0	2	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0013	1251	2	0	0	2	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0014	1251	2	2	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0015	1251	1	0	0	1	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0016	1251	1	0	0	1	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0017	1251	1	0	0	0	0	1	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0018	1251	1	0	1	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0019	1251	1	0	0	0	0	1	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	t0020	1251	1	1	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9B_chr7_151010151_151029494	1/1	t0001	649	448	87	74	220	18	47	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	t0002	649	5	5	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	t0003	649	3	1	2	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	t0004	649	2	0	0	1	0	1	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	t0005	649	2	2	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	t0006	649	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	t0007	649	1	0	0	0	0	1	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	t0008	649	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	t0009	649	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	t0010	649	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	t0011	649	1	0	0	0	0	1	copy fasta	ATG9B	chr7	151010151	151029494
ATIC_chr2_215307059_215354764	1/1	t0001	194	202	68	34	78	6	14	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	t0002	194	77	2	11	52	1	11	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	t0003	194	59	0	12	26	3	18	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	t0004	194	21	17	3	0	0	1	copy fasta	ATIC	chr2	215307059	215354764