JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIRT_chr17_10817470_10843087	0/0	t0031	3044	1	1	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIR_chrX_15379799_15498333	0/0	t0001	402	220	52	35	107	8	18	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	1/1	t0002	402	26	1	15	1	1	6	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	t0003	402	17	11	3	3	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	t0004	402	4	0	0	4	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	t0005	403	2	0	0	0	0	2	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	t0006	402	2	2	0	0	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	t0007	403	1	0	0	1	0	0	copy fasta	PIR	chrX	15379799	15498333
PISD_chr22_31613491_31667215	1/0	t0001	1129	154	28	46	58	9	12	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0002	1129	43	22	13	5	0	3	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0003	1127	37	0	2	33	0	2	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/1	t0004	1129	34	2	1	19	1	10	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0005	1128	9	4	2	0	0	3	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0006	1125	8	8	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0007	1129	7	0	0	7	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0008	1129	5	5	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0009	1129	5	4	0	1	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0010	1129	4	0	3	0	0	1	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0011	1128	4	2	0	0	2	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0012	1129	3	2	1	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0013	1128	3	3	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0014	1129	2	0	0	2	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0015	1128	2	2	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0016	1129	1	1	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0017	1129	1	0	0	0	1	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0018	1129	1	0	0	1	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0019	1127	1	0	0	0	1	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0020	1129	1	0	0	0	0	1	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0021	1129	1	1	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0022	1129	1	1	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	t0023	1129	1	1	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PITHD1_chr1_23773418_23793232	0/1	t0001	955	197	46	45	84	9	12	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	1/0	t0002	955	138	14	28	74	9	12	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0003	955	12	10	2	0	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0004	960	8	5	3	0	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0005	955	5	5	0	0	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0006	955	3	3	0	0	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0007	955	2	0	0	2	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0008	955	1	0	1	0	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0009	955	1	0	1	0	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0010	955	1	0	0	1	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0011	955	1	0	0	0	0	1	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0012	955	1	1	0	0	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0013	955	1	0	0	0	0	1	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	t0014	955	1	0	0	1	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITPNA_chr17_1512718_1567792	1/1	t0001	3076	255	45	44	123	8	33	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0002	3076	38	2	7	25	1	3	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0003	3076	12	11	1	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0004	3076	9	9	0	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0005	3075	9	1	1	2	3	2	copy fasta	PITPNA	chr17	1512718	1567792