JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PITPNA_chr17_1512718_1567792	0/0	t0006	3076	6	5	1	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0007	3077	5	0	0	4	0	1	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0008	3076	5	5	0	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0009	3076	5	0	1	4	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0010	3076	4	4	0	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0011	3076	3	3	0	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0012	3076	3	0	0	3	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0013	3076	2	2	0	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0014	3075	2	0	2	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0015	3075	1	1	0	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0016	3076	1	0	0	0	0	1	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0017	3076	1	0	1	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0018	3076	1	0	0	0	0	1	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0019	3076	1	0	0	1	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0020	3076	1	0	0	1	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0021	3076	1	0	0	1	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0022	3076	1	0	0	0	0	1	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0023	3076	1	1	0	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	t0024	3076	1	1	0	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNB_chr22_27846669_27924256	1/1	t0001	2099	183	59	24	81	5	12	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0002	2097	73	5	18	44	3	3	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0003	2099	61	10	6	32	6	7	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0004	2099	27	6	4	5	2	10	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0005	2097	5	0	0	5	0	0	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0006	2105	3	2	1	0	0	0	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0007	2099	3	0	0	3	0	0	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0008	2099	3	3	0	0	0	0	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0009	2099	2	0	0	2	0	0	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0010	2097	2	0	0	2	0	0	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0011	2099	1	0	0	0	0	1	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0012	2099	1	1	0	0	0	0	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0013	2099	1	0	1	0	0	0	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	t0014	2099	1	0	0	0	0	1	copy fasta	PITPNB	chr22	27846669	27924256
PITPNC1_chr17_67372281_67702256	0/0	t0001	5241	37	2	13	16	0	6	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0002	5240	15	5	5	0	2	3	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0003	5241	13	0	5	5	1	2	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0004	5242	10	0	1	9	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0005	5240	8	3	0	0	1	4	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0006	5236	6	4	0	1	0	1	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0007	5236	6	6	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0008	5234	6	6	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0009	5241	6	1	3	1	0	1	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0010	5236	5	1	0	4	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0011	5234	5	0	1	1	3	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	1/0	t0012	5243	5	1	1	0	1	1	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0013	5244	5	3	1	0	0	1	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0014	5240	5	0	2	0	2	1	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0015	5242	4	0	0	4	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0016	5241	4	0	3	0	0	1	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0017	5240	3	3	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256