JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PITPNC1_chr17_67372281_67702256	0/0	t0018	5236	3	3	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0019	5240	3	2	1	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0020	5242	3	0	0	0	0	3	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0021	5234	3	1	0	1	0	1	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0022	5238	2	2	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0023	5241	2	0	0	2	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0024	5240	2	2	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0025	5242	2	1	0	0	1	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0026	5236	2	0	2	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0027	5243	2	0	1	0	1	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0028	5240	2	2	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0029	5245	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0030	5241	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0031	5238	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0032	5240	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0033	5238	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0034	5240	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0035	5238	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0036	5241	1	0	0	0	0	1	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0037	5241	1	0	1	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0038	5239	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0039	5241	1	0	0	1	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0040	5239	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0041	5239	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0042	5241	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0043	5238	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0044	5239	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0045	5240	1	0	1	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0046	5240	1	0	0	0	0	1	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0047	5241	1	0	1	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0048	5238	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0049	5241	1	0	1	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0050	5240	1	0	0	0	1	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0051	5238	1	0	0	1	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0052	5240	1	0	0	0	0	1	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0053	5241	1	0	0	1	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0054	5238	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0055	5241	1	0	0	1	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0056	5241	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0057	5243	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0058	5245	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0059	5243	1	0	0	1	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0060	5242	1	0	0	1	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0061	5236	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0062	5236	1	0	0	1	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0063	5236	1	0	1	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0064	5234	1	0	0	1	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0065	5236	1	0	1	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0066	5240	1	0	0	0	1	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/1	t0067	5243	1	0	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256