JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PITPNC1_chr17_67372281_67702256	0/0	t0068	5241	1	0	0	1	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0069	5243	1	0	0	1	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0070	5240	1	0	1	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0071	5238	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0072	5236	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0073	5236	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0074	5236	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0075	5234	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0076	5239	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	t0077	5244	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNM1_chr11_67486768_67510363	1/1	t0001	483	296	81	58	107	14	34	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	t0002	483	3	3	0	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	t0003	483	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM2_chr12_122978480_123156090	1/1	t0001	3085	103	50	18	20	3	10	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0002	3085	64	2	19	29	3	11	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0003	3085	26	1	2	20	0	3	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0004	3085	17	17	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0005	3085	6	0	0	4	0	2	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0006	3085	3	1	1	0	0	1	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0007	3085	2	0	0	2	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0008	3085	1	0	0	1	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0009	3085	1	1	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0010	3085	1	0	0	1	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0011	3085	1	0	0	0	0	1	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0012	3085	1	0	0	0	0	1	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0013	3085	1	0	1	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0014	3085	1	0	0	1	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0015	3085	1	0	0	0	0	1	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	t0016	3085	1	0	1	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM3_chr17_6446263_6561555	0/0	t0001	4225	39	2	7	23	5	2	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0002	4221	10	0	6	1	1	2	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0003	4219	10	2	4	4	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0004	4225	6	1	4	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0005	4224	6	1	1	3	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0006	4267	6	6	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0007	4223	4	4	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0008	4226	4	1	0	2	1	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/1	t0009	4220	4	0	3	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0010	4225	4	4	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0011	4224	4	4	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0012	4221	4	0	0	4	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0013	4221	4	2	0	2	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0014	4229	3	0	0	3	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0015	4214	3	3	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0016	4223	3	0	3	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0017	4222	3	0	2	0	1	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0018	4221	3	0	0	1	0	2	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0019	4220	3	0	0	2	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0020	4225	3	1	1	0	1	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0021	4226	3	0	0	1	0	2	copy fasta	PITPNM3	chr17	6446263	6561555