JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PITPNM3_chr17_6446263_6561555	0/0	t0022	4269	3	3	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0023	4269	2	2	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0024	4224	2	2	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0025	4228	2	0	0	2	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0026	4270	2	2	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0027	4266	2	2	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0028	4221	2	0	1	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0029	4225	2	2	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0030	4210	2	0	2	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0031	4224	2	2	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0032	4194	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0033	4191	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0034	4253	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0035	4271	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0036	4222	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0037	4227	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0038	4219	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0039	4218	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0040	4225	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0041	4225	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0042	4227	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0043	4224	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0044	4227	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0045	4201	1	0	0	0	1	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0046	4214	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0047	4222	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0048	4269	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0049	4215	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0050	4262	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0051	4271	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0052	4269	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0053	4222	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0054	4221	1	0	0	0	1	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0055	4223	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0056	4209	1	0	0	0	1	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0057	4227	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0058	4226	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0059	4221	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0060	4223	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0061	4222	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0062	4226	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0063	4237	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0064	4205	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0065	4221	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0066	4221	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0067	4218	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0068	4222	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0069	4218	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0070	4219	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0071	4220	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555