JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PITPNM3_chr17_6446263_6561555	0/0	t0072	4217	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0073	4180	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0074	4226	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0075	4228	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0076	4226	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0077	4208	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0078	4222	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0079	4224	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0080	4226	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0081	4218	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0082	4223	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0083	4225	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0084	4221	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0085	4219	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	1/0	t0086	4225	1	0	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0087	4225	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0088	4203	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0089	4222	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0090	4222	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0091	4212	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0092	4225	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0093	4258	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0094	4225	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0095	4226	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0096	4222	1	0	0	0	0	1	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0097	4223	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0098	4224	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	t0099	4221	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITRM1_chr10_3132728_3177782	1/1	t0001	314	393	77	74	189	16	35	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	t0002	314	39	13	5	15	0	6	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	t0003	314	5	4	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	t0004	314	5	0	0	4	0	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	t0005	314	3	0	0	0	2	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	t0006	314	1	0	0	0	0	1	copy fasta	PITRM1	chr10	3132728	3177782
PITX1_chr5_135022734_135039228	0/1	t0001	1395	89	12	7	58	4	7	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0002	1381	65	7	10	37	4	7	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0003	1382	52	5	5	41	1	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0004	1380	40	34	6	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0005	1395	24	1	4	12	0	7	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	1/0	t0006	1393	19	0	13	3	1	1	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0007	1396	18	1	2	8	2	5	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0008	1381	14	0	11	0	1	2	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0009	1393	9	0	8	0	1	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0010	1387	7	7	0	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0011	1387	6	0	4	0	0	2	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0012	1394	6	2	1	3	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0013	1381	6	5	1	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0014	1396	4	0	1	2	0	1	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0015	1384	4	4	0	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	t0016	1394	3	0	0	1	0	2	copy fasta	PITX1	chr5	135022734	135039228