JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIWIL1_chr12_130332887_130377637	0/0	t0005	1300	19	18	1	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0006	1303	19	1	4	13	0	1	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/1	t0007	1301	18	0	3	9	0	5	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0008	1300	9	3	0	0	0	6	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0009	1299	9	1	1	6	0	1	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0010	1301	8	8	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0011	1312	8	3	0	3	1	1	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0012	1310	8	0	0	3	0	5	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0013	1312	6	0	1	5	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0014	1288	6	1	4	0	1	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0015	1312	6	0	0	5	0	1	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0016	1293	5	4	1	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0017	1302	5	4	1	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0018	1300	5	1	0	4	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0019	1310	5	0	0	5	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0020	1288	4	1	3	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0021	1312	4	0	0	4	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0022	1302	4	1	0	3	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0023	1289	3	1	1	0	0	1	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0024	1299	3	3	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0025	1302	3	3	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0026	1302	3	3	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0027	1303	3	3	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0028	1299	3	1	1	0	0	1	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0029	1303	3	1	1	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0030	1298	2	2	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0031	1294	2	2	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0032	1282	2	2	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0033	1301	2	0	1	0	1	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0034	1302	2	1	1	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0035	1301	2	1	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0036	1300	2	0	0	0	0	2	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0037	1327	2	0	0	2	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0038	1288	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0039	1303	1	1	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0040	1296	1	1	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0041	1310	1	0	0	0	0	1	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0042	1325	1	1	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0043	1326	1	1	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0044	1289	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0045	1297	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0046	1312	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0047	1299	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0048	1298	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0049	1300	1	0	1	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0050	1302	1	0	0	0	0	1	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0051	1299	1	0	1	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0052	1302	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0053	1303	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0054	1299	1	0	0	0	0	1	copy fasta	PIWIL1	chr12	130332887	130377637