JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIWIL1_chr12_130332887_130377637	0/0	t0055	1300	1	1	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0056	1301	1	1	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0057	1288	1	0	1	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0058	1301	1	1	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0059	1312	1	0	0	0	1	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0060	1310	1	0	0	0	0	1	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	t0061	1300	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL2_chr8_22270316_22362568	0/0	t0001	2193	67	53	6	6	1	1	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	1/0	t0002	2193	63	11	21	26	1	3	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0003	2193	51	1	10	29	1	10	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/1	t0004	2191	49	4	12	24	0	8	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0005	2193	10	0	6	4	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0006	2193	8	4	2	0	0	2	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0007	2193	5	5	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0008	2193	4	4	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0009	2193	4	4	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0010	2192	4	0	0	3	0	1	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0011	2194	3	0	0	1	1	1	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0012	2193	3	2	1	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0013	2194	3	0	0	3	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0014	2193	3	3	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0015	2193	2	1	0	0	0	1	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0016	2194	2	1	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0017	2193	2	0	0	0	2	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0018	2194	1	0	0	0	0	1	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0019	2193	1	0	1	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0020	2193	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0021	2193	1	0	1	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0022	2193	1	1	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0023	2194	1	1	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0024	2193	1	1	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0025	2193	1	0	1	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0026	2193	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0027	2193	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0028	2191	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0029	2191	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	t0030	2191	1	0	1	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL3_chr22_24714034_24779720	0/0	t0001	860	189	44	29	81	11	24	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	1/1	t0002	860	184	39	39	75	5	24	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	t0003	860	4	0	0	4	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	t0004	860	2	2	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	t0005	860	2	2	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	t0006	860	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	t0007	860	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	t0008	860	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	t0009	860	1	0	0	1	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	t0010	860	1	0	0	1	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL4_chr11_94562368_94626421	0/0	t0001	581	182	49	33	71	8	21	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	1/1	t0002	581	166	39	30	63	8	24	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	t0003	581	23	0	0	23	0	0	copy fasta	PIWIL4	chr11	94562368	94626421