JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIWIL4_chr11_94562368_94626421	0/0	t0004	581	6	6	0	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	t0005	581	5	4	1	0	0	0	copy fasta	PIWIL4	chr11	94562368	94626421
PIWIL4_chr11_94562368_94626421	0/0	t0006	581	2	0	0	1	0	1	copy fasta	PIWIL4	chr11	94562368	94626421
PJA1_chrX_69155861_69170453	1/1	t0001	596	331	75	60	147	13	34	copy fasta	PJA1	chrX	69155861	69170453
PJA1_chrX_69155861_69170453	0/0	t0002	596	3	3	0	0	0	0	copy fasta	PJA1	chrX	69155861	69170453
PJA2_chr5_109329722_109414974	0/0	t0001	2730	214	56	29	110	5	14	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/1	t0002	2730	81	5	29	17	8	21	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0003	2730	8	7	1	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0004	2730	8	7	1	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0005	2730	5	5	0	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0006	2730	4	1	1	1	0	1	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0007	2730	3	3	0	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	1/0	t0008	2730	2	0	0	0	0	1	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0009	2730	2	2	0	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0010	2730	2	0	2	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0011	2733	2	0	1	0	1	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0012	2730	1	0	0	0	0	1	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0013	2730	1	0	0	1	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0014	2730	1	0	0	0	0	1	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0015	2730	1	0	0	1	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0016	2730	1	0	0	1	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0017	2730	1	0	0	1	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0018	2730	1	0	0	1	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0019	2730	1	1	0	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0020	2730	1	0	0	0	0	1	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0021	2730	1	0	1	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0022	2730	1	1	0	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0023	2748	1	0	1	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0024	2733	1	1	0	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0025	2730	1	1	0	0	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJA2_chr5_109329722_109414974	0/0	t0026	2718	1	0	0	1	0	0	copy fasta	PJA2	chr5	109329722	109414974
PJVK_chr2_178446378_178467102	1/1	t0001	1243	178	42	43	64	9	18	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0002	1248	117	3	15	84	2	13	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0003	1247	41	23	3	15	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0004	1244	19	4	6	6	0	3	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0005	1242	14	0	2	9	0	3	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0006	1247	9	8	1	0	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0007	1249	6	0	0	6	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0008	1246	4	4	0	0	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0009	1244	2	2	0	0	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0010	1243	2	0	0	2	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0011	1243	2	0	0	0	2	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0012	1248	1	0	0	1	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0013	1243	1	0	0	1	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0014	1242	1	0	0	1	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0015	1243	1	0	0	0	0	1	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0016	1274	1	0	0	0	1	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0017	1247	1	1	0	0	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0018	1264	1	1	0	0	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0019	1265	1	1	0	0	0	0	copy fasta	PJVK	chr2	178446378	178467102