Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATIC_chr2_215307059_215354764	0/0	t0005	194	9	9	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	t0006	194	6	2	3	0	0	1	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	t0007	194	5	0	2	3	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	t0008	194	2	0	1	0	0	1	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	t0009	194	1	0	0	1	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATL1_chr14_50555145_50638045	1/1	t0001	828	292	89	64	107	8	22	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	t0002	828	20	0	2	18	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	t0003	828	3	0	0	0	0	3	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	t0004	828	1	1	0	0	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	t0005	828	1	1	0	0	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	t0006	828	1	0	0	1	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	t0007	828	1	1	0	0	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	t0008	828	1	0	0	0	0	1	copy fasta	ATL1	chr14	50555145	50638045
ATL2_chr2_38288954_38382273	1/0	t0001	2054	62	11	11	26	6	7	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0002	2052	50	15	9	16	0	10	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0003	2055	22	20	2	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/1	t0004	2053	17	8	2	2	1	3	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0005	2055	15	0	3	8	3	1	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0006	2058	11	0	0	11	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0007	2054	10	9	1	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0008	2057	8	6	2	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0009	2054	4	0	2	0	0	2	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0010	2051	3	2	1	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0011	2053	3	0	3	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0012	2059	3	0	0	3	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0013	2051	2	1	1	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0014	2052	2	2	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0015	2055	2	2	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0016	2053	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0017	2052	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0018	2053	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0019	2053	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0020	2053	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0021	2055	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0022	2055	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0023	2056	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0024	2054	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0025	2053	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0026	2055	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0027	2057	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0028	2055	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0029	2054	1	0	0	1	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0030	2053	1	0	1	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0031	2055	1	0	1	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0032	2055	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0033	2054	1	0	0	0	0	1	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0034	2054	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0035	2052	1	0	1	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0036	2056	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	t0037	2057	1	0	0	1	0	0	copy fasta	ATL2	chr2	38288954	38382273