JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PJVK_chr2_178446378_178467102	0/0	t0020	1266	1	1	0	0	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0021	1243	1	0	0	1	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0022	1249	1	0	0	1	0	0	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0023	1243	1	0	0	0	0	1	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0024	1243	1	0	0	0	0	1	copy fasta	PJVK	chr2	178446378	178467102
PJVK_chr2_178446378_178467102	0/0	t0025	1242	1	0	0	1	0	0	copy fasta	PJVK	chr2	178446378	178467102
PKD1L1_chr7_47769614_47953466	1/1	t0001	556	272	76	45	107	12	30	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	t0002	556	29	11	7	5	2	4	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	t0003	556	4	4	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L1_chr7_47769614_47953466	0/0	t0004	556	1	1	0	0	0	0	copy fasta	PKD1L1	chr7	47769614	47953466
PKD1L3_chr16_71924538_72005402	1/1	t0001	425	292	68	52	112	18	40	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	t0002	423	14	14	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	t0003	425	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1L3_chr16_71924538_72005402	0/0	t0004	425	1	1	0	0	0	0	copy fasta	PKD1L3	chr16	71924538	72005402
PKD1_chr16_2083708_2140898	1/0	t0001	1229	108	14	30	37	5	21	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/1	t0002	1235	31	23	5	0	2	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0003	1231	17	0	8	8	0	1	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0004	1225	9	7	2	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0005	1237	8	8	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0006	1229	5	0	1	0	1	3	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0007	1223	4	0	0	0	0	4	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0008	1231	3	2	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0009	1229	3	3	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0010	1231	3	0	2	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0011	1227	3	3	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0012	1225	2	0	1	0	0	1	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0013	1229	2	2	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0014	1225	1	0	0	0	1	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0015	1229	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0016	1229	1	0	0	0	1	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0017	1229	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0018	1233	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0019	1239	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0020	1253	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0021	1231	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0022	1229	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0023	1229	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0024	1229	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0025	1229	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0026	1229	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0027	1229	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0028	1229	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0029	1229	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0030	1227	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	t0031	1233	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD2L1_chr10_100283149_100335228	1/1	t0001	373	302	81	59	108	12	40	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	t0002	373	4	3	1	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L2_chr5_137884457_137947747	1/1	t0001	417	332	91	72	121	12	34	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	t0002	417	3	1	0	0	2	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	t0003	417	1	0	0	1	0	0	copy fasta	PKD2L2	chr5	137884457	137947747