JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PKD2_chr4_88002635_88082777	1/0	t0001	2183	192	52	32	84	5	18	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0002	2183	69	1	10	50	2	6	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0003	2183	39	5	7	23	1	3	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/1	t0004	2183	24	5	14	0	2	2	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0005	2183	8	7	1	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0006	2183	1	0	0	0	0	1	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0007	2183	1	1	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0008	2183	1	1	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0009	2183	1	1	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0010	2183	1	1	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0011	2183	1	0	0	1	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0012	2183	1	1	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0013	2183	1	0	0	1	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0014	2183	1	0	0	1	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	t0015	2183	1	1	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKDCC_chr2_42043021_42063517	1/1	t0001	1009	180	30	36	82	7	23	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0002	1009	136	22	25	84	0	5	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0003	1009	50	11	6	20	2	11	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0004	1009	16	1	6	0	5	4	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0005	1009	11	5	4	0	0	2	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0006	1009	10	10	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0007	1009	6	6	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0008	1009	3	2	1	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0009	1012	3	0	1	0	0	2	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0010	1009	3	2	1	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0011	1009	1	0	0	0	0	1	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0012	1009	1	0	1	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0013	1009	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0014	1009	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0015	1009	1	0	0	1	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0016	1009	1	0	0	1	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0017	1009	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0018	1009	1	0	1	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0019	1009	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0020	1009	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0021	1009	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0022	1009	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0023	1012	1	0	0	1	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	t0024	1009	1	0	0	1	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDREJ_chr22_46250663_46268343	1/1	t0001	920	229	31	59	86	12	39	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	t0002	920	42	34	3	0	0	5	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	t0003	920	15	7	4	0	2	2	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	t0004	920	14	13	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	t0005	920	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	t0006	958	1	0	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	t0007	920	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	t0008	920	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKHD1L1_chr8_109357461_109542207	0/1	t0001	7238	80	9	18	39	5	8	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0002	7238	53	1	12	30	3	7	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0003	7223	25	1	6	0	4	14	copy fasta	PKHD1L1	chr8	109357461	109542207