JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PKHD1L1_chr8_109357461_109542207	0/0	t0004	7239	18	13	3	0	0	2	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0005	7238	11	11	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0006	7237	10	9	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0007	7238	7	5	1	0	1	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0008	7238	7	7	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0009	7237	7	6	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0010	7238	6	1	5	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0011	7238	5	0	0	5	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0012	7239	4	4	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0013	7238	4	2	1	0	0	1	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0014	7226	4	0	4	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0015	7222	3	0	1	0	2	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0016	7237	3	3	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0017	7237	2	2	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0018	7238	2	0	0	1	0	1	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0019	7238	2	1	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0020	7238	2	2	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0021	7238	2	0	2	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0022	7237	2	2	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0023	7238	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0024	7239	1	0	0	1	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0025	7239	1	0	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0026	7238	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0027	7238	1	0	0	1	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0028	7238	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0029	7238	1	0	0	1	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0030	7238	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0031	7238	1	0	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0032	7239	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0033	7239	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0034	7238	1	0	0	1	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0035	7238	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0036	7238	1	0	0	1	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	1/0	t0037	7238	1	0	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0038	7238	1	0	0	0	0	1	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0039	7238	1	0	0	1	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0040	7238	1	0	0	0	1	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0041	7238	1	0	0	1	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0042	7237	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0043	7238	1	0	0	1	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0044	7237	1	0	0	1	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	t0045	7238	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1_chr6_51610299_52092613	0/1	t0001	4047	67	23	15	19	1	8	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0002	4047	14	6	2	4	1	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0003	4047	10	1	3	2	0	4	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0004	4048	10	1	2	6	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0005	4047	9	9	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0006	4047	4	4	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0007	4047	3	2	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0008	4046	3	2	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613