JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PKHD1_chr6_51610299_52092613	0/0	t0009	4046	2	2	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0010	4048	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0011	3976	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0012	4034	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0013	4033	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0014	4047	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0015	4048	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0016	4047	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0017	4048	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0018	4047	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0019	4048	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	t0020	4048	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	1/0	t0021	4047	1	0	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKIA_chr8_78511340_78610267	1/0	t0001	3732	105	35	24	26	6	13	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0002	3734	30	7	2	17	2	2	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0003	3732	8	5	3	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0004	3734	4	1	3	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0005	3734	4	1	0	3	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0006	3764	3	3	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0007	3756	3	1	2	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0008	3765	2	0	1	0	1	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0009	3757	2	0	1	0	1	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0010	3756	2	2	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0011	3736	2	1	0	0	0	1	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0012	3732	2	1	0	1	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0013	3732	2	2	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0014	3768	1	1	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0015	3766	1	0	1	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0016	3763	1	0	0	0	0	1	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0017	3761	1	0	1	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0018	3759	1	0	1	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0019	3767	1	1	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0020	3758	1	1	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0021	3757	1	1	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0022	3754	1	1	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0023	3753	1	0	0	0	0	1	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0024	3752	1	1	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0025	3750	1	1	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0026	3743	1	0	1	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0027	3732	1	0	0	1	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/1	t0028	3732	1	0	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0029	3759	1	1	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIA_chr8_78511340_78610267	0/0	t0030	3757	1	1	0	0	0	0	copy fasta	PKIA	chr8	78511340	78610267
PKIB_chr6_122605405_122731373	0/0	t0001	1471	167	32	31	83	4	17	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	0/0	t0002	1470	70	12	10	35	6	7	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	1/0	t0003	1470	43	12	12	8	2	8	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	0/1	t0004	1470	15	10	0	2	1	1	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	0/0	t0005	1471	4	4	0	0	0	0	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	0/0	t0006	1471	2	2	0	0	0	0	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	0/0	t0007	1471	2	2	0	0	0	0	copy fasta	PKIB	chr6	122605405	122731373