JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PKIB_chr6_122605405_122731373	0/0	t0008	1470	2	0	1	0	1	0	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	0/0	t0009	1470	2	0	0	2	0	0	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	0/0	t0010	1470	2	0	0	0	2	0	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	0/0	t0011	1471	1	1	0	0	0	0	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	0/0	t0012	1471	1	0	0	0	0	1	copy fasta	PKIB	chr6	122605405	122731373
PKIB_chr6_122605405_122731373	0/0	t0013	1470	1	1	0	0	0	0	copy fasta	PKIB	chr6	122605405	122731373
PKIG_chr20_44577579_44624037	1/1	t0001	920	282	90	69	83	12	26	copy fasta	PKIG	chr20	44577579	44624037
PKIG_chr20_44577579_44624037	0/0	t0002	920	13	0	0	12	0	1	copy fasta	PKIG	chr20	44577579	44624037
PKIG_chr20_44577579_44624037	0/0	t0003	920	3	0	3	0	0	0	copy fasta	PKIG	chr20	44577579	44624037
PKIG_chr20_44577579_44624037	0/0	t0004	920	1	0	0	0	0	1	copy fasta	PKIG	chr20	44577579	44624037
PKIG_chr20_44577579_44624037	0/0	t0005	920	1	0	0	1	0	0	copy fasta	PKIG	chr20	44577579	44624037
PKLR_chr1_155284293_155306438	0/0	t0001	1323	156	43	22	68	5	18	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/1	t0002	1323	148	44	33	47	4	19	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	t0003	1323	2	0	1	0	1	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	t0004	1323	1	1	0	0	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	t0005	1323	1	0	0	1	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	t0006	1323	1	0	0	1	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	t0007	1323	1	0	0	0	0	1	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	t0008	1323	1	0	0	1	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKMYT1_chr16_2967808_2985446	1/1	t0001	562	367	76	78	163	14	34	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	t0002	562	15	15	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	t0003	562	4	0	0	4	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	t0004	562	2	0	0	2	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	t0005	562	1	1	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	t0006	562	1	1	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	t0007	562	1	0	0	1	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	t0008	562	1	1	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKM_chr15_72194029_72236190	1/1	t0001	710	367	92	68	165	8	32	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	t0002	710	2	0	2	0	0	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	t0003	710	1	0	0	1	0	0	copy fasta	PKM	chr15	72194029	72236190
PKN1_chr19_14428306_14476859	1/1	t0001	292	355	75	76	138	18	46	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	t0002	304	17	17	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	t0003	292	2	0	0	2	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	t0004	310	2	0	0	2	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN2_chr1_88679273_88841255	0/1	t0001	3116	159	41	32	73	4	8	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	1/0	t0002	3116	102	8	21	59	4	9	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0003	3112	11	0	1	10	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0004	3115	6	6	0	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0005	3116	6	5	1	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0006	3115	5	0	0	4	1	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0007	3115	5	4	1	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0008	3116	5	5	0	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0009	3115	3	2	0	0	0	1	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0010	3115	3	0	0	3	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0011	3115	3	3	0	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0012	3108	3	3	0	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0013	3115	2	2	0	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0014	3115	2	0	2	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0015	3116	2	0	0	2	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0016	3116	2	0	0	2	0	0	copy fasta	PKN2	chr1	88679273	88841255