JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PKN2_chr1_88679273_88841255	0/0	t0017	3116	1	0	0	1	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0018	3116	1	0	0	0	0	1	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0019	3116	1	0	0	1	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0020	3116	1	0	0	0	1	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0021	3116	1	0	1	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0022	3116	1	0	0	1	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0023	3116	1	0	0	0	0	1	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0024	3116	1	0	0	1	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0025	3116	1	1	0	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0026	3116	1	0	0	1	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	t0027	3116	1	0	1	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN3_chr9_128697503_128725916	0/1	t0001	724	340	83	64	134	14	44	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	t0002	725	7	2	2	3	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	t0003	725	4	2	0	2	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	t0004	724	2	0	0	2	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	1/0	t0005	724	2	1	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	t0006	724	1	0	1	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	t0007	724	1	1	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	t0008	724	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	t0009	724	1	1	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	t0010	724	1	0	1	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKNOX1_chr21_42969562_43038931	0/0	t0001	3980	85	7	20	47	3	8	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0002	3980	65	24	7	29	3	2	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	1/0	t0003	3990	47	4	5	34	0	3	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/1	t0004	4002	21	0	5	8	1	6	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0005	4000	17	0	1	11	1	4	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0006	4000	14	4	4	0	4	2	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0007	3980	14	14	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0008	3973	14	1	5	0	4	4	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0009	3990	7	0	7	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0010	3980	6	0	4	2	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0011	3980	4	4	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0012	3980	4	3	1	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0013	3980	3	0	3	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0014	3980	3	0	0	3	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0015	3971	3	0	2	0	0	1	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0016	3980	3	0	0	3	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0017	3988	3	0	0	2	0	1	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0018	3992	3	0	0	2	0	1	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0019	3972	2	0	0	0	1	1	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0020	4000	2	2	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0021	4002	2	0	0	2	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0022	3980	2	2	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0023	3980	2	2	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0024	3982	2	0	0	2	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0025	3980	2	0	2	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0026	3980	2	1	0	0	1	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0027	3982	2	2	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0028	3990	2	2	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0029	3990	2	0	0	2	0	0	copy fasta	PKNOX1	chr21	42969562	43038931